Publications

Bijvoet_WordleThe research by the scientists of the Bijvoet Center has resulted in more than 5000 scientific publications since the institute was founded in 1988. In recent years, approximately 170 papers are published by the scientists of the Bijvoet Center each year, with many in leading scientific journals such as Nature, Science and Cell. The archive of publications below goes back to 1972, as it also includes earlier publications from the scientists that founded the Bijvoet Center. Please note that the archive does not contain all publications from our associate members.

Below, you can select different years to see the publications of that year, or you can go to our publication search page to search for specific authors or topics. We also provide downloads for recent annual reports and progress reports of the Bijvoet Center.

5126 entries « 1 of 52 »

2015

Sosic, Izidor; Anderluh, Marko; Sova, Matej; Gobec, Martina; Rascan, Irena Mlinarisc; Derouaux, Adeline; Amoroso, Ana; Terrak, Mohammed; Breukink, Eefjan; Gobec, Stanislav

Structure-Activity Relationships of Novel Tryptamine-Based Inhibitors of Bacterial Transglycosylase - DOI link

JOURNAL OF MEDICINAL CHEMISTRY, 58 (24), pp. 9712-9721, 2015.

Mance, Deni; Sinnige, Tessa; Kaplan, Mohammed; Narasimhan, Siddarth; Daniels, Mark; Houben, Klaartje; Baldus, Marc; Weingarth, Markus

An Efficient Labelling Approach to Harness Backbone and Side-Chain Protons in H-1-Detected Solid-State NMR Spectroscopy - DOI link

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 54 (52), pp. 15799-15803, 2015.

Steins, Anne; Dik, Pieter; Muller, Wally; Vervoort, Stephin; Reimers, Kerstin; Kuhbier, Joern; Vogt, Peter; van Apeldoorn, Aart; Coffer, Paul; Schepers, Koen

In Vitro Evaluation of Spider Silk Meshes as a Potential Biomaterial for Bladder Reconstruction - DOI link

PLOS ONE, 10 (12), 2015.

Jantschke, Anne; Koers, Eline; Mance, Deni; Weingarth, Markus; Brunner, Eike; Baldus, Marc

Insight into the Supramolecular Architecture of Intact Diatom Biosilica from DNP-Supported Solid-State NMR Spectroscopy - DOI link

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 54 (50), pp. 15069-15073, 2015.

van Erp, Susan; van den Heuvel, Dianne; Fujita, Yuki; Robinson, Ross; Hellemons, Anita; Adolfs, Youri; Van Battum, Eljo; Blokhuis, Anna; Kuijpers, Marijn; Demmers, Jeroen; Hedman, Hakan; Hoogenraad, Casper; Siebold, Christian; Yamashita, Toshihide; Pasterkamp, Jeroen

Lrig2 Negatively Regulates Ectodomain Shedding of Axon Guidance Receptors by ADAM Proteases - DOI link

DEVELOPMENTAL CELL, 35 (5), pp. 537-552, 2015.

Varki, Ajit; Cummings, Richard; Aebi, Markus; Packer, Nicole; Seeberger, Peter; Esko, Jeffrey; Stanley, Pamela; Hart, Gerald; Darvill, Alan; Kinoshita, Taroh; Prestegard, James; Schnaar, Ronald; Freeze, Hudson; Marth, Jamey; Bertozzi, Carolyn; Etzler, Marilynn; Frank, Martin; Vliegenthart, Johannes; Luetteke, Thomas; Perez, Serge; Bolton, Evan; Rudd, Pauline; Paulson, James; Kanehisa, Minoru; Toukach, Philip; Aoki-Kinoshita, Kiyoko; Dell, Anne; Narimatsu, Hisashi; York, William; Taniguchi, Naoyuki; Kornfeld, Stuart

Symbol Nomenclature for Graphical Representations of Glycans - DOI link

GLYCOBIOLOGY, 25 (12), pp. 1323-1324, 2015.

van der Beek, Samantha; Le Breton, Yoann; Ferenbach, Andrew; Chapman, Robert; van Aalten, Daan; Navratilova, Iva; Boons, Geert-Jan; McIver, Kevin; van Sorge, Nina; Dorfmueller, Helge

GacA is essential for Group A Streptococcus and defines a new class of monomeric dTDP-4-dehydrorhamnose reductases (RmlD) - DOI link

MOLECULAR MICROBIOLOGY, 98 (5), pp. 946-962, 2015.

van Beuningen, Sam; Will, Lena; Harterink, Martin; Chazeau, Anael; van Battum, Eljo; Frias, Catia; Franker, Mariella; Katrukha, Eugene; Stucchi, Riccardo; Vocking, Karin; Antunes, Ana; Slenders, Lotte; Doulkeridou, Sofia; Smitt, Peter Sillevis; Altelaar, Maarten; Post, Jan; Akhmanova, Anna; Pasterkamp, Jeroen; Kapitein, Lukas; de Graaff, Esther; Hoogenraad, Casper

TRIM46 Controls Neuronal Polarity and Axon Specification by Driving the Formation of Parallel Microtubule Arrays - DOI link

NEURON, 88 (6), pp. 1208-1226, 2015.

Bonvin, Alexandre; Keskin, Ozlem

Editorial overview: Protein-protein interactions - DOI link

CURRENT OPINION IN STRUCTURAL BIOLOGY, 35 , pp. VII-IX, 2015.

Liu, Fan; Heck, Albert

Interrogating the architecture of protein assemblies and protein interaction networks by cross-linking mass spectrometry - DOI link

CURRENT OPINION IN STRUCTURAL BIOLOGY, 35 , pp. 100-108, 2015.

Pravdivtsev, Andrey; Ivanov, Konstantin; Yurkovskaya, Alexandra; Petrov, Pavel; Limbach, Hans-Heinrich; Kaptein, Robert; Vieth, Hans-Martin

Spin polarization transfer mechanisms of SABRE: A magnetic field dependent study - DOI link

JOURNAL OF MAGNETIC RESONANCE, 261 , pp. 73-82, 2015.

Akhmanova, Anna; Steinmetz, Michel

Control of microtubule organization and dynamics: two ends in the limelight - DOI link

NATURE REVIEWS MOLECULAR CELL BIOLOGY, 16 (12), pp. 711-726, 2015.

Diebolder, Christoph; Halff, Els; Koster, Abraham; Huizinga, Eric; Koning, Roman

Cryoelectron Tomography of the NAIP5/NLRC4 Inflammasome: Implications for NLR Activation - DOI link

STRUCTURE, 23 (12), pp. 2349-2357, 2015.

Liu, Fan; Rijkers, Dirk; Post, Harm; Heck, Albert

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry - DOI link

NATURE METHODS, 12 (12), pp. 1179+, 2015.

Xue, Li; Dobbs, Drena; Bonvin, Alexandre; Honavar, Vasant

Computational prediction of protein interfaces: A review of data driven methods - DOI link

FEBS LETTERS, 589 (23), pp. 3516-3526, 2015.

Agyekum, Isaac; Patel, Anish; Zong, Chengli; Boons, Geert-Jan; Amster, Jonathan

Assignment of hexuronic acid stereochemistry in synthetic heparan sulfate tetrasaccharides with 2-O-sulfo uronic acids using electron detachment dissociation - DOI link

INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 390 (SI), pp. 163-169, 2015.

Berends, Evelien; Gorham Jr., Ronald; Ruyken, Maartje; Soppe, Jasper; Orhan, Hatice; Aerts, Piet; de Haas, Carla; Gros, Piet; Rooijakkers, Suzan

Molecular insights into the surface-specific arrangement of complement C5 convertase enzymes - DOI link

BMC BIOLOGY, 13 , 2015.

da Silva, Marta Esteves; Adrian, Max; Schatzle, Philipp; Lipka, Joanna; Watanabe, Takuya; Cho, Sukhee; Futai, Kensuke; Wierenga, Corette; Kapitein, Lukas; Hoogenraad, Casper

Positioning of AMPA Receptor-Containing Endosomes Regulates Synapse Architecture - DOI link

CELL REPORTS, 13 (5), pp. 933-943, 2015.

Long, Yuchen; Goedhart, Joachim; Schneijderberg, Martinus; Terpstra, Inez; Shimotohno, Akie; Bouchet, Benjamin; Akhmanova, Anna; Gadella Jr., Theodorus; Heidstra, Renze; Scheres, Ben; Blilou, Ikram

SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement - DOI link

PLANT JOURNAL, 84 (4), pp. 773-784, 2015.

Visini, Ricardo; Jin, Xian; Bergmann, Myriam; Michaud, Gaelle; Pertici, Francesca; Fu, Ou; Pukin, Aliaksei; Branson, Thomas; Thies-Weesie, Dominique; Kemmink, Johan; Gillon, Emilie; Imberty, Anne; Stocker, Achim; Darbre, Tamis; Pieters, Roland; Reymond, Jean-Louis

Structural Insight into Multivalent Galactoside Binding to Pseudomonas aeruginosa Lectin LecA - DOI link

ACS CHEMICAL BIOLOGY, 10 (11), pp. 2455-2462, 2015.

Nieto, Lidia; Tharun, Inga; Balk, Mark; Wienk, Hans; Boelens, Rolf; Ottmann, Christian; Milroy, Lech-Gustav; Brunsveld, Luc

Estrogen Receptor Folding Modulates cSrc Kinase SH2 Interaction via a Helical Binding Mode - DOI link

ACS CHEMICAL BIOLOGY, 10 (11), pp. 2624-2632, 2015.

Blanchaert, Bart; Wyseure, Tine; Breukink, Eefjan; Adams, Erwin; Declerck, Paul; Van Schepdael, Ann

Development of a liquid chromatography/mass spectrometry assay for the bacterial transglycosylation reaction through measurement of Lipid II - DOI link

ELECTROPHORESIS, 36 (21), pp. 2841-2849, 2015.

McNulty, Reginald; Lokareddy, Ravi Kumar; Roy, Ankoor; Yang, Yang; Lander, Gabriel; Heck, Albert; Johnson, John; Cingolani, Gino

Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22 - DOI link

JOURNAL OF MOLECULAR BIOLOGY, 427 (20), pp. 3285-3299, 2015.

Schmidlin, Thierry; Boender, Aijen; Frese, Christian; Heck, Albert; Adan, Roger; Altelaar, Maarten

Diet-Induced Neuropeptide Expression: Feasibility of Quantifying Extended and Highly Charged Endogenous Peptide Sequences by Selected Reaction Monitoring - DOI link

ANALYTICAL CHEMISTRY, 87 (19), pp. 9966-9973, 2015.

Egan, Alexander; Biboy, Jacob; van't Veer, Inge; Breukink, Eefjan; Vollmer, Waldemar

Activities and regulation of peptidoglycan synthases - DOI link

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 370 (1679), 2015.

Dondelinger, Yves; Jouan-Lanhouet, Sandrine; Divert, Tatyana; Theatre, Emilie; Bertin, John; Gough, Peter; Giansanti, Piero; Heck, Albert; Dejardin, Emmanuel; Vandenabeele, Peter; Bertrand, Mathieu

NF-kappa B-Independent Role of IKK alpha/IKK beta in Preventing RIPK1 Kinase-Dependent Apoptotic and Necroptotic Cell Death during TNF Signaling - DOI link

MOLECULAR CELL, 60 (1), pp. 63-76, 2015.

Lutz, Martin; de Klein, Thomas; Huijben, Jeroen

5-Iodouracil: structure of a reflection twin - DOI link

ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 71 (10), pp. 912+, 2015.

van Zundert,; Bonvin,

DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes - DOI link

BIOINFORMATICS, 31 (19), pp. 3222-3224, 2015.

Massink, Maarten; Creton, Marijn; Spanevello, Francesca; Fennis, Willem; Cune, Marco; Savelberg, Sanne; Nijman, Isaac; Maurice, Madelon; van den Boogaard, Marie-Jose; van Haaften, Gijs

Loss-of-Function Mutations in the WNT Co-receptor LRP6 Cause Autosomal-Dominant Oligodontia - DOI link

AMERICAN JOURNAL OF HUMAN GENETICS, 97 (4), pp. 621-626, 2015.

Raaijmakers, Linsey; Giansanti, Piero; Possik, Patricia; Mueller, Judith; Peeper, Daniel; Heck, Albert; Altelaar, Maarten

PhosphoPath: Visualization of Phosphosite-centric Dynamics in Temporal Molecular Networks - DOI link

JOURNAL OF PROTEOME RESEARCH, 14 (10), pp. 4332-4341, 2015.

Olthof, Evelyn; Gulich, Alexandra; Renne, Mike; Landman, Sija; Joosten, Leo; Roelofs, Hennie; Wanten, Geert

Immune activation by medium-chain triglyceride-containing lipid emulsions is not modulated by n-3 lipids or toll-like receptor 4 - DOI link

TOXICOLOGY IN VITRO, 29 (7), pp. 1851-1858, 2015.

Mathies, Guinevere; Caporini, Marc; Michaelis, Vladimir; Liu, Yangping; Hu, Kan-Nian; Mance, Deni; Zweier, Jay; Rosay, Melanie; Baldus, Marc; Griffin, Robert

Efficient Dynamic Nuclear Polarization at 800 MHz/527 GHz with Trityl-Nitroxide Biradicals - DOI link

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 54 (40), pp. 11770-11774, 2015.

Friscourt, Frederic; Fahrni, Christoph; Boons, Geert-Jan

Fluorogenic Strain-Promoted Alkyne-Diazo Cycloadditions - DOI link

CHEMISTRY-A EUROPEAN JOURNAL, 21 (40), pp. 13996-14001, 2015.

Vreven, Thom; Moal, Iain; Vangone, Anna; Pierce, Brian; Kastritis, Panagiotis; Torchala, Mieczyslaw; Chaleil, Raphael; Jimenez-Garcia, Brian; Bates, Paul; Fernandez-Recio, Juan; Bonvin, Alexandre; Weng, Zhiping

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2 - DOI link

JOURNAL OF MOLECULAR BIOLOGY, 427 (19), pp. 3031-3041, 2015.

Meng, Xiangfeng; Dobruchowska, Justyna; Gerwig, Gerrit; Kamerling, Johannis; Dijkhuizen, Lubbert

Synthesis of oligo- and polysaccharides by Lactobacillus reuteri 121 reuteransucrase at high concentrations of sucrose - DOI link

CARBOHYDRATE RESEARCH, 414 , pp. 85-92, 2015.

Zeqiraj, Elton; Tian, Lei; Piggott, Christopher; Pillon, Monica; Duffy, Nicole; Ceccarelli, Derek; Keszei, Alexander; Lorenzen, Kristina; Kurinov, Igor; Orlicky, Stephen; Gish, Gerald; Heck, Albert; Guarne, Alba; Greenberg, Roger; Sicheri, Frank

Higher-Order Assembly of BRCC36-KIAA0157 Is Required for DUB Activity and Biological Function - DOI link

MOLECULAR CELL, 59 (6), pp. 970-983, 2015.

Furse, Samuel; Wienk, Hans; Boelens, Rolf; de Kroon, Anton; Killian, Antoinette

E. coli MG1655 modulates its phospholipid composition through the cell cycle - DOI link

FEBS LETTERS, 589 (19, B), pp. 2726-2730, 2015.

Liu, Lin; Zha, Jingying; DiGiandomenico, Antonio; McAllister, Douglas; Stover, Kendall; Wang, Qun; Boons, Geert-Jan

Synthetic Enterobacterial Common Antigen (ECA) for the Development of a Universal Immunotherapy for Drug-Resistant Enterobacteriaceae - DOI link

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 54 (37), pp. 10953-10957, 2015.

Huang, Wei; Gao, Qi; Boons, Geert-Jan

Assembly of a Complex Branched Oligosaccharide by Combining Fluorous-Supported Synthesis and Stereoselective Glycosylations using Anomeric Sulfonium Ions - DOI link

CHEMISTRY-A EUROPEAN JOURNAL, 21 (37), pp. 12920+, 2015.

van der Cruijsen, Elwin; Koers, Eline; Sauvee, Claire; Hulse, Raymond; Weingarth, Markus; Ouari, Olivier; Perozo, Eduardo; Tordo, Paul; Baldus, Marc

Biomolecular DNP-Supported NMR Spectroscopy using Site-Directed Spin Labeling - DOI link

CHEMISTRY-A EUROPEAN JOURNAL, 21 (37), pp. 12971-12977, 2015.

Marino, Fabio; Bern, Marshall; Mommen, Geert; Leney, Aneika; van Gaans-van den Brink, Jacqueline; Bonvin, Alexandre; Becker, Christopher; van Els, Cecile; Heck, Albert

Extended O-GIcNAc on HLA Class-I-Bound Peptides - DOI link

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 137 (34), pp. 10922-10925, 2015.

Benevento, Marco; Tonge, Peter; Puri, Mira; Nagy, Andras; Heck, Albert; Munoz, Javier

Fluctuations in histone H4 isoforms during cellular reprogramming monitored by middle-down proteomics - DOI link

PROTEOMICS, 15 (18, SI), pp. 3219-3231, 2015.

Weiss, Victor; Bereszcazk, Jessica; Havlik, Marlene; Kallinger, Peter; Goesler, Irene; Kumar, Mohit; Blaas, Dieter; Marchetti-Deschmann, Martina; Heck, Albert; Szymanski, Wladyslaw; Allmaier, Guenter

Analysis of a Common Cold Virus and Its Subviral Particles by Gas-Phase Electrophoretic Mobility Molecular Analysis and Native Mass Spectrometry - DOI link

ANALYTICAL CHEMISTRY, 87 (17), pp. 8709-8717, 2015.

Gebretsadik, Fiseha; Mance, Deni; Baldus, Marc; Salagre, Pilar; Cesteros, Yolanda

Microwave synthesis of delaminated acid saponites using quaternary ammonium salt or polymer as template. Study of pH influence - DOI link

APPLIED CLAY SCIENCE, 114 , pp. 20-30, 2015.

Tanley, Simon; Diederichs, Kay; Kroon-Batenburg, Loes; Levy, Colin; Schreurs, Antoine; Helliwell, John

Response from Tanley et al. to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin - DOI link

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 71 (9), pp. 1982-1983, 2015.

Kroon-Batenburg, Loes; Schreurs, Antoine; Ravelli, Raimond; Gros, Piet

Accounting for partiality in serial crystallography using ray-tracing principles - DOI link

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 71 (9), pp. 1799-1811, 2015.

Koymans, Kirsten; Feitsma, Louris; Brondijk, Harma; Aerts, Piet; Lukkien, Eddie; Lossl, Philip; van Kessel, Kok; de Haas, Carla; van Strijp, Jos; Huizinga, Eric

Structural basis for inhibition of TLR2 by staphylococcal superantigen-like protein 3 (SSL3) - DOI link

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112 (35), pp. 11018-11023, 2015.

Rigort, Alexander; Plitzko, Juergen

Cryo-focused-ion-beam applications in structural biology - DOI link

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 581 (SI), pp. 122-130, 2015.

Glas, Marjolein; van den Saparoea, Bart Berg; McLaughlin, Stephen; Roseboom, Winfried; Liu, Fan; Koningstein, Gregory; Fish, Alexander; den Blaauwen, Tanneke; Heck, Albert; de Jong, Luitzen; Bitter, Wilbert; de Esch, Iwan; Luirink, Joen

The Soluble Periplasmic Domains of Escherichia coli Cell Division Proteins FtsQ/FtsB/FtsL Form a Trimeric Complex with Submicromolar Affinity - DOI link

JOURNAL OF BIOLOGICAL CHEMISTRY, 290 (35), pp. 21498-21509, 2015.

Benoit, Isabelle; Zhou, Miaomiao; Duarte, Alexandra Vivas; Downes, Damien; Todd, Richard; Kloezen, Wendy; Post, Harm; Heck, Albert; Altelaar, Maarten; de Vries, Ronald

Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization - DOI link

SCIENTIFIC REPORTS, 5 , 2015.

Kevenaar, Josta; Hoogenraad, Casper

The axonal cytoskeleton: from organization to function - DOI link

FRONTIERS IN MOLECULAR NEUROSCIENCE, 8 , 2015.

Faridounnia, Maryam; Wienk, Hans; Kovacic, Lidija; Folkers, Gert; Jaspers, Nicolaas; Kaptein, Robert; Hoeijmakers, Jan; Boelens, Rolf

The Cerebro-oculo-facio-skeletal Syndrome Point Mutation F231L in the ERCC1 DNA Repair Protein Causes Dissociation of the ERCC1-XPF Complex - DOI link

JOURNAL OF BIOLOGICAL CHEMISTRY, 290 (33), pp. 20541-20555, 2015.

Chinoy, Zoeisha; Schafer, Christopher; West, Christopher; Boons, Geert-Jan

Chemical Synthesis of a Glycopeptide Derived from Skp1 for Probing Protein Specific Glycosylation - DOI link

CHEMISTRY-A EUROPEAN JOURNAL, 21 (33), pp. 11779-11787, 2015.

Kapitein, Lukas; Hoogenraad, Casper

Building the Neuronal Microtubule Cytoskeleton - DOI link

NEURON, 87 (3), pp. 492-506, 2015.

Fu, Ou; Pukin, Aliaksei; van Ufford, Quarles; Kemmink, Johan; de Mol, Nico; Pieters, Roland

Functionalization of a Rigid Divalent Ligand for LecA, a Bacterial Adhesion Lectin - DOI link

CHEMISTRYOPEN, 4 (4), pp. 463-470, 2015.

Fu, Ou; Pukin, Aliaksei; van Ufford, Quarles; Branson, Thomas; Thies-Weesie, Dominique; Turnbull, Bruce; Visser, Gerben; Pieters, Roland

Tetra-versus Pentavalent Inhibitors of Cholera Toxin - DOI link

CHEMISTRYOPEN, 4 (4), pp. 471-477, 2015.

van der Schot, Gijs; Bonvin, Alexandre

Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR - DOI link

JOURNAL OF BIOMOLECULAR NMR, 62 (4, SI), pp. 497-502, 2015.

Mikhaylova, Marina; Cloin, Bas; Finan, Kieran; van den Berg, Robert; Teeuw, Jalmar; Kijanka, Marta; Sokolowski, Mikolaj; Katrukha, Eugene; Maidorn, Manuel; Opazo, Felipe; Moutel, Sandrine; Vantard, Marylin; Perez, Frank; van Henegouwen, Paul Bergen En; Hoogenraad, Casper; Ewers, Helge; Kapitein, Lukas

Resolving bundled microtubules using anti-tubulin nanobodies - DOI link

NATURE COMMUNICATIONS, 6 , 2015.

Patyshakuliyeva, Aleksandrina; Post, Harm; Zhou, Miaomiao; Jurak, Edita; Heck, Albert; Hilden, Kristiina; Kabel, Mirjam; Makela, Miia; Altelaar, Maarten; de Vries, Ronald

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle - DOI link

ENVIRONMENTAL MICROBIOLOGY, 17 (8), pp. 3098-3109, 2015.

Gautier, Violette; Boumeester, Anja; Loessl, Philip; Heck, Albert

Lysine conjugation properties in human IgGs studied by integrating high-resolution native mass spectrometry and bottom-up proteomics - DOI link

PROTEOMICS, 15 (16, SI), pp. 2756-2765, 2015.

Heck, Albert

Gaining weight in structural biology: Applications of mass spectrometry in protein science - DOI link

PROTEIN SCIENCE, 24 (8, SI), pp. 1173-1175, 2015.

Snijder, Joost; van de Waterbeemd, Michiel; Glover, Matthew; Shi, Liuqing; Clemmer, David; Heck, Albert

Conformational landscape and pathway of disulfide bond reduction of human alpha defensin - DOI link

PROTEIN SCIENCE, 24 (8, SI), pp. 1264-1271, 2015.

Koopmans, Timo; Wood, Thomas; `t Hart, Peter; Kleijn, Laurens; Hendrickx, Antoni; Willems, Rob; Breukink, Eefjan; Martin, Nathaniel

Semisynthetic Lipopeptides Derived from Nisin Display Antibacterial Activity and Lipid II Binding on Par with That of the Parent Compound - DOI link

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 137 (29), pp. 9382-9389, 2015.

Ledin, Petr; Xu, Weinan; Friscourt, Frederic; Boons, Geert-Jan; Tsukruk, Vladimir

Branched Polyhedral Oligomeric Silsesquioxane Nanoparticles Prepared via Strain-Promoted 1,3-Dipolar Cycloadditions - DOI link

LANGMUIR, 31 (29), pp. 8146-8155, 2015.

Vangone, Anna; Bonvin, Alexandre

Contacts-based prediction of binding affinity in protein-protein complexes - DOI link

ELIFE, 4 , 2015.

Jevtov, Irena; Zacharogianni, Margarita; van Oorschot, Marinke; van Zadelhoff, Guus; Aguilera-Gomez, Angelica; Vuillez, Igor; Braakman, Ineke; Hafen, Ernst; Stocker, Hugo; Rabouille, Catherine

TORC2 mediates the heat stress response in Drosophila by promoting the formation of stress granules - DOI link

JOURNAL OF CELL SCIENCE, 128 (14), pp. 2497-2508, 2015.

MacGillavry, Harold; Hoogenraad, Casper

The internal architecture of dendritic spines revealed by super-resolution imaging: What did we learn so far? - DOI link

EXPERIMENTAL CELL RESEARCH, 335 (2), pp. 180-186, 2015.

Oldenhof, Sander; Terrade, Frederic; Lutz, Martin; van der Vlugt, Jan Ivar; Reek, Joost

Formation and Site-Selective Reactivity of a Nonsymmetric Dinuclear Iridium BisMETAMORPhos Complex - DOI link

ORGANOMETALLICS, 34 (13), pp. 3209-3215, 2015.

Sali, Andrej; Berman, Helen; Schwede, Torsten; Trewhella, Jill; Kleywegt, Gerard; Burley, Stephen; Markley, John; Nakamura, Haruki; Adams, Paul; Bonvin, Alexandre; Chiu, Wah; Dal Peraro, Matteo; Di Maio, Frank; Ferrin, Thomas; Gruenewald, Kay; Gutmanas, Aleksandras; Henderson, Richard; Hummer, Gerhard; Iwasaki, Kenji; Johnson, Graham; Lawson, Catherine; Meiler, Jens; Marti-Renom, Marc; Montelione, Gaetano; Nilges, Michael; Nussinov, Ruth; Patwardhan, Ardan; Rappsilber, Juri; Read, Randy; Saibil, Helen; Schroeder, Gunnar; Schwieters, Charles; Seidel, Claus; Svergun, Dmitri; Topf, Maya; Ulrich, Eldon; Velankar, Sameer; Westbrook, John

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop - DOI link

STRUCTURE, 23 (7), pp. 1156-1167, 2015.

Sinnige, Tessa; Weingarth, Markus; Daniels, Mark; Boelens, Rolf; Bonvin, Alexandre; Houben, Klaartje; Baldus, Marc

Conformational Plasticity of the POTRA 5 Domain in the Outer Membrane Protein Assembly Factor BamA - DOI link

STRUCTURE, 23 (7), pp. 1317-1324, 2015.

Welling, Maaike; Chen, Hsu-Hsin; Munoz, Javier; Musheev, Michael; Kester, Lennart; Junker, Jan Philipp; Mischerikow, Nikolai; Arbab, Mandana; Kuijk, Ewart; Silberstein, Lev; Kharchenko, Peter; Geens, Mieke; Niehrs, Christof; van de Velde, Hilde; van Oudenaarden, Alexander; Heck, Albert; Geijsen, Niels

DAZL regulates Tet1 translation in murine embryonic stem cells - DOI link

EMBO REPORTS, 16 (7), pp. 791-802, 2015.

Tsiatsiani, Liana; Heck, Albert

Proteomics beyond trypsin - DOI link

FEBS JOURNAL, 282 (14), pp. 2612-2626, 2015.

Drost, Ruben; Rosar, Vera; Marta, Silvia Dalla; Lutz, Martin; Demitri, Nicola; Milani, Barbara; de Bruin, Bas; Elsevier, Cornelis

Pd-Catalyzed Z-Selective Semihydrogenation of Alkynes: Determining the Type of Active Species - DOI link

CHEMCATCHEM, 7 (14), pp. 2095-2107, 2015.

Bode, Arno; Pulles, Paul; Lutz, Martin; Poulisse, Ward; Jiang, Shanfeng; Meijer, Jan; van Enckevort, Willem; Vlieg, Elias

Sodium Chloride Dihydrate Crystals: Morphology, Nucleation, Growth, and Inhibition - DOI link

CRYSTAL GROWTH & DESIGN, 15 (7), pp. 3166-3174, 2015.

de Graaf, Erik; Kaplon, Joanna; Mohammed, Shabaz; Vereijken, Lisette; Duarte, Daniel; Gallego, Laura Redondo; Heck, Albert; Peeper, Daniel; Altelaar, Maarten

Signal Transduction Reaction Monitoring Deciphers Site-Specific PI3K-mTOR/MAPK Pathway Dynamics in Onaigene-Induced Senescence - DOI link

JOURNAL OF PROTEOME RESEARCH, 14 (7), pp. 2906-2914, 2015.

Peng, Mao; Aye, Thin Thin; Snel, Berend; van Breukelen, Bas; Scholten, Arjen; Heck, Albert

Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution - DOI link

JOURNAL OF PROTEOME RESEARCH, 14 (7), pp. 2976-2987, 2015.

Kaplan, Mohammed; Cukkemane, Abhishek; van Zundert, Gydo; Narasimhan, Siddarth; Daniels, Mark; Mance, Deni; Waksman, Gabriel; Bonvin, Alexandre; Fronzes, Remi; Folkers, Gert; Baldus, Marc

Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR - DOI link

NATURE METHODS, 12 (7), pp. 649+, 2015.

Brewer, Kyle; Bacaj, Taulant; Cavalli, Andrea; Camilloni, Carlo; Swarbrick, James; Liu, Jin; Zhou, Amy; Zhou, Peng; Barlow, Nicholas; Xu, Junjie; Seven, Alpay; Prinslow, Eric; Voleti, Rashmi; Haeussinger, Daniel; Bonvin, Alexandre; Tomchick, Diana; Vendruscolo, Michele; Graham, Bim; Suedhof, Thomas; Rizo, Josep

Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution - DOI link

NATURE STRUCTURAL & MOLECULAR BIOLOGY, 22 (7), pp. 555+, 2015.

Wilbrink, Maarten; ten Kate, Geert; Sanders, Peter; Gerwig, Gerrit; van Leeuwen, Sander; Sallomons, Erik; Klarenbeek, Bert; Hage, Johannes; van Vuure, Carine; Dijkhuizen, Lubbert; Kamerling, Johannis

Enzymatic Decoration of Prebiotic Galacto-oligosaccharides (Vivinal GOS) with Sialic Acid Using Trypanosoma cruzi trans-Sialidase and Two Bovine Sialoglycoconjugates as Donor Substrates - DOI link

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 63 (25), pp. 5976-5984, 2015.

Langereis, Martijn; Bakkers, Mark; Deng, Lingquan; Padler-Karavani, Vered; Vervoort, Stephin; Hulswit, Ruben; van Vliet, Arno; Gerwig, Gerrit; de Poot, Stefanie; Boot, Willemijn; van Ederen, Anne Marie; Heesters, Balthasar; van der Loos, Chris; van Kuppeveld, Frank; Yu, Hai; Huizinga, Eric; Chen, Xi; Varki, Ajit; Kamerling, Johannis; de Groot, Raoul

Complexity and Diversity of the Mammalian Sialome Revealed by Nidovirus Virolectins - DOI link

CELL REPORTS, 11 (12), pp. 1966-1978, 2015.

Moore, Eli; Hopmans, Ellen; Rijpstra, Irene; Sanchez-Andrea, Irene; Villanueva, Laura; Wienk, Hans; Schoutsen, Frans; Stams, Alfons; Damste, Jaap Sinninghe

Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans - DOI link

FRONTIERS IN MICROBIOLOGY, 6 , 2015.

Wyatt, Timon; Gerwig, Gerrit; Kamerling, Johannis; Wosten, Han; Dijksterhuis, Jan

Structural analysis of novel trehalose-based oligosaccharides from extremely stress-tolerant ascospores of Neosartorya fischeri (Aspergillus fischeri) - DOI link

CARBOHYDRATE RESEARCH, 411 , pp. 49-55, 2015.

Rad-Malekshahi, Mazda; Visscher, Koen; Rodrigues, Joao; de Vries, Renko; Hennink, Wim; Baldus, Marc; Bonvin, Alexandre; Mastrobattista, Enrico; Weingarth, Markus

The Supramolecular Organization of a Peptide-Based Nanocarrier at High Molecular Detail - DOI link

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 137 (24), pp. 7775-7784, 2015.

Giansanti, Piero; Aye, Thin Thin; van den Toorn, Henk; Peng, Mao; van Breukelen, Bas; Heck, Albert

An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas - DOI link

CELL REPORTS, 11 (11), pp. 1834-1843, 2015.

Saes, Bartholomeus; Verhoeven, Dide; Lutz, Martin; Gebbink, Robertus Klein; Moret, Marc-Etienne

Coordination of a Diphosphine-Ketone Ligand to Ni(0), Ni(I), and Ni(II): Reduction-Induced Coordination - DOI link

ORGANOMETALLICS, 34 (12), pp. 2710-2713, 2015.

Broeckx, Leen; Bucci, Alberto; Zuccaccia, Cristiano; Lutz, Martin; Macchioni, Alceo; Mueller, Christian

Cyclometalated Phosphinine-Iridium(III) Complexes: Synthesis, Reactivity, and Application as Phosphorus-Containing Water-Oxidation Catalysts - DOI link

ORGANOMETALLICS, 34 (12), pp. 2943-2952, 2015.

Mance, Deni; Gast, Peter; Huber, Martina; Baldus, Marc; Ivanov, Konstantin

The magnetic field dependence of cross-effect dynamic nuclear polarization under magic angle spinning - DOI link

JOURNAL OF CHEMICAL PHYSICS, 142 (23), 2015.

Martinez-Rucobo, Fuensanta; Kohler, Rebecca; van de Waterbeemd, Michiel; Heck, Albert; Hemann, Matthias; Herzog, Franz; Stark, Holger; Cramer, Patrick

Molecular Basis of Transcription-Coupled Pre-mRNA Capping - DOI link

MOLECULAR CELL, 58 (6), pp. 1079-1089, 2015.

Dyachenko, Andrey; Wang, Guanbo; Belov, Mike; Makarov, Alexander; de Jong, Rob; van den Bremer, Ewald; Parren, Paul; Heck, Albert

Tandem Native Mass-Spectrometry on Antibody-Drug Conjugates and Submillion Da Antibody-Antigen Protein Assemblies on an Orbitrap EMR Equipped with a High-Mass Quadrupole Mass Selector - DOI link

ANALYTICAL CHEMISTRY, 87 (12), pp. 6095-6102, 2015.

Pronker, Matti; Bos, Trusanne; Sharp, Thomas; Thies-Weesie, Dominique; Janssen, Bert

Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure - DOI link

JOURNAL OF BIOLOGICAL CHEMISTRY, 290 (24), pp. 15092-15101, 2015.

Li, Xin; van Oers, Monique; Vlak, Just; Braakman, Ineke

Folding of influenza virus hemagglutinin in insect cells is fast and efficient - DOI link

JOURNAL OF BIOTECHNOLOGY, 203 , pp. 77-83, 2015.

Vreeken, Vincent; Siegler, Maxime; de Bruin, Bas; Reek, Joost; Lutz, Martin; van der Vlugt, Jarl Ivar

C-H Activation of Benzene by a Photoactivated Ni-II(azide): Formation of a Transient Nickel Nitrido Complex - DOI link

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 54 (24), pp. 7055-7059, 2015.

Jahandideh, Samad; Jamalan, Mostafa; Faridounnia, Maryam

Molecular dynamics study of the dominant-negative E219K polymorphism in human prion protein - DOI link

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 33 (6), pp. 1315-1325, 2015.

Shakiba, Nika; White, Carl; Lipsitz, Yonatan; Yachie-Kinoshita, Ayako; Tonge, Peter; Hussein, Samer; Puri, Mira; Elbaz, Judith; Morrissey-Scoot, James; Li, Mira; Munoz, Javier; Benevento, Marco; Rogers, Ian; Hanna, Jacob; Heck, Albert; Wollscheid, Bernd; Nagy, Andras; Zandstra, Peter

CD24 tracks divergent pluripotent states in mouse and human cells - DOI link

NATURE COMMUNICATIONS, 6 , 2015.

Baker, Lindsay; Daniels, Mark; van der Cruijsen, Elwin; Folkers, Gert; Baldus, Marc

Efficient cellular solid-state NMR of membrane proteins by targeted protein labeling - DOI link

JOURNAL OF BIOMOLECULAR NMR, 62 (2), pp. 199-208, 2015.

Panatala, Radhakrishnan; Hennrich, Hanka; Holthuis, Joost

Inner workings and biological impact of phospholipid flippases - DOI link

JOURNAL OF CELL SCIENCE, 128 (11), pp. 2021-2032, 2015.

Buchtova, Marcela; Chaloupkova, Radka; Zakrzewska, Malgorzata; Vesela, Iva; Cela, Petra; Barathova, Jana; Gudernova, Iva; Zajickova, Renata; Trantirek, Lukas; Martin, Jorge; Kostas, Michal; Otlewski, Jacek; Damborsky, Jiri; Kozubik, Alois; Wiedlocha, Antoni; Krejci, Pavel

Instability restricts signaling of multiple fibroblast growth factors - DOI link

CELLULAR AND MOLECULAR LIFE SCIENCES, 72 (12), pp. 2445-2459, 2015.

Franssen, Elske; Zhao, Rong-Rong; Koseki, Hiroaki; Kanamarlapudi, Venkateswarlu; Hoogenraad, Casper; Eva, Richard; Fawcett, James

Exclusion of Integrins from CNS Axons Is Regulated by Arf6 Activation and the AIS - DOI link

JOURNAL OF NEUROSCIENCE, 35 (21), pp. 8359-8375, 2015.

Furse, Samuel; de Kroon, Anton

Phosphatidylcholine's functions beyond that of a membrane brick - DOI link

MOLECULAR MEMBRANE BIOLOGY, 32 (4), pp. 117-119, 2015.

Cybulski, Larisa Estefania; Ballering, Joost; Moussatova, Anastassiia; Inda, Maria Eugenia; Vazquez, Daniela; Wassenaar, Tsjerk; de Mendoza, Diego; Tieleman, Peter; Killian, Antoinette

Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness - DOI link

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112 (20), pp. 6353-6358, 2015.

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